gencore_trinity

Summary

Coming soon!

Software Packages

perl-biox-workflow-plugin-filedetails

Version: 0.11

Conda Channel: bioconda

Summary:

Get metadata for files in directories processed by BioX::Workflow

perl-biox-workflow-plugin-fileexists

Version: 0.13

Conda Channel: bioconda

Summary:

a plugin to BioX::Workflow

perl-biox-workflow

Version: 1.10

Conda Channel: bioconda

Summary:

A very opinionated template based workflow writer.

perl-hpc-runner-command

Version: 3.1.1

Conda Channel: bioconda

Summary:

rsem

Version: 1.2.28

Conda Channel: bioconda

Summary:

RSEM (RNA-Seq by Expectation-Maximization)

transdecoder

Version: 2.1.0

Conda Channel: bioconda

Summary:

TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.

trinity

Version: 2.2.0

Conda Channel: bioconda

Summary:

Trinity assembles transcript sequences from Illumina RNA-Seq data

trinotate

Version: 3.0.1

Conda Channel: bioconda

Summary:

Trinotate is a comprehensive annotation suite designed for automatic functional annotation of transcriptomes, particularly de novo assembled transcriptomes, from model or non-model organisms