gencore_qc
Summary
Coming soon!
Software Packages
deeptools
Version: 2.3.2
Conda Channel: bioconda
Summary:
A set of user-friendly tools for normalization and visualzation of deep-sequencing data
fastqc
Version: 0.11.5
Conda Channel: bioconda
Summary:
A quality control tool for high throughput sequence data.
fastx_toolkit
Version: 0.0.14
Conda Channel: bioconda
Summary:
multiqc
Version: 0.8
Conda Channel: bioconda
Summary:
Create aggregate bioinformatics analysis report across many samples
perl-biox-workflow-plugin-filedetails
Version: 0.11
Conda Channel: bioconda
Summary:
Get metadata for files in directories processed by BioX::Workflow
perl-biox-workflow-plugin-fileexists
Version: 0.13
Conda Channel: bioconda
Summary:
a plugin to BioX::Workflow
perl-biox-workflow
Version: 1.10
Conda Channel: bioconda
Summary:
A very opinionated template based workflow writer.
perl-hpc-runner-command
Version: 3.1.1
Conda Channel: bioconda
Summary:
pyfaidx
Version: 0.4.7.1
Conda Channel: bioconda
Summary:
pyfaidx: efficient pythonic random access to fasta subsequences
pyfasta
Version: 0.5.2
Conda Channel: bioconda
Summary:
fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
pyfastaq
Version: 3.11.0
Conda Channel: bioconda
Summary:
Script to manipulate FASTA and FASTQ files, plus API for developers
python
Version: 3.5
Conda Channel: conda-forge
Summary:
General purpose programming language
qualimap
Version: 2.2.2a
Conda Channel: bioconda
Summary:
Quality control of alignment sequencing data and its derivatives like feature counts
trimmomatic
Version: 0.36
Conda Channel: bioconda
Summary:
Genetic variant annotation and effect prediction toolbox